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The Autotransporter beta-domain Family [Function: Biogenesis/Secretion] Seed alignment | Full alignment | Pfam Wiki page | TC-DB page

The type V secretion pathway encompasses the autotransporter proteins (AT-1), the two-partner secretion system (TPS) and the recently described type AT-2 family of proteins. AT proteins contain their own transporter domain, covalently attached to the C-terminal extremity of the secreted passenger domain. The secreted proteins are exported in a Sec-dependent manner across the inner membrane, after which they cross the outer membrane with the help of their cognate transporters. Translocation appears to be folding-sensitive, indicating that AT passenger domains cross the periplasm and the outer membrane in non-native conformations and fold progressively at the cell surface. A major difference between AT and TPS pathways arises from the manner by which specificity is established between the secreted protein and its transporter. To date, all of the functionally characterized autotransporters have been implicated in bacterial virulence by displaying enzymatic activity (protease, peptidase, lipase, esterase), mediating actin-promoted bacterial motility or acting as adhesins, toxins/cytotoxins, immunomodulatory proteins or, as more recently discovered, permitting maturation of another virulent protein. The structures of several translocator domains have been solved, suggesting that the &ß-barrel consists of 12 strands. FabF is a new class of secretion system similar to type V secretion in the autotransporter proteins (AT-1), characterized by a C-terminal, 12-stranded ß barrel with a helix-blocked pore in the closed state. However, in the truncated FapF structure, the N terminus exits the barrel on the periplasmic side rather than passing completely through the pore as in autotransporters. Regarding Hapb, it represents the ß barrel domain of self-associating autotransporters (SAATs). SAATs is a set of virulence factors that enhance bacterial biofilm 87. The Haemophilus influenzae Hap SAAT consists of three domains, the residues 1 - 25 correspond to the signal peptide, the residues 26 - 1036 refer to the Haps that called the passenger domain, while the residues 1037 - 1394 form the 14 ß strands at the C-terminal.


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Literature references


BamA is required for autotransporter secretion
Biochim Biophys Acta Gen Subj. 2020 Jul;1864(7):129581. doi: 10.1016/j.bbagen.2020.129581. Epub 2020 Feb 27.
PMID: 32114025

Comparison of type 5d autotransporter phospholipases demonstrates a correlation between high activity and intracellular pathogenic lifestyle
Biochem J. 2019 Sep 24;476(18):2657-2676. doi: 10.1042/BCJ20190136.
PMID: 31492736

Biogenesis and function of the autotransporter adhesins YadA, intimin and invasin
Int J Med Microbiol. 2019 Jul;309(5):331-337. doi: 10.1016/j.ijmm.2019.05.009. Epub 2019 Jun 1.
PMID: 31176600

Inhibition of autotransporter biogenesis by small molecules
Mol Microbiol. 2019 Jul;112(1):81-98. doi: 10.1111/mmi.14255. Epub 2019 May 3.
PMID: 30983025

Type V Secretion in Gram-Negative Bacteria
EcoSal Plus. 2019 Feb;8(2):10.1128/ecosalplus.ESP-0031-2018. doi: 10.1128/ecosalplus.ESP-0031-2018.
PMID: 30838971

Identification of a novel post-insertion step in the assembly of a bacterial outer membrane protein
Mol Microbiol. 2018 Oct;110(1):143-159. doi: 10.1111/mmi.14102. Epub 2018 Sep 28.
PMID: 30107065

Hop-family Helicobacter outer membrane adhesins form a novel class of Type 5-like secretion proteins with an interrupted ß-barrel domain
Mol Microbiol. 2018 Oct;110(1):33-46. doi: 10.1111/mmi.14075. Epub 2018 Sep 28.
PMID: 29995350

CapC, a Novel Autotransporter and Virulence Factor of Campylobacter jejuni
Appl Environ Microbiol. 2018 Aug 1;84(16):e01032-18. doi: 10.1128/AEM.01032-18. Print 2018 Aug 15.
PMID: 29915112

Molecular basis for the folding of ß-helical autotransporter passenger domains
Nat Commun. 2018 Apr 11;9(1):1395. doi: 10.1038/s41467-018-03593-2.
PMID: 29643377

Job contenders: roles of the ß-barrel assembly machinery and the translocation and assembly module in autotransporter secretion
Mol Microbiol. 2017 Nov;106(4):505-517. doi: 10.1111/mmi.13832. Epub 2017 Sep 26.
PMID: 28887826

A new class of hybrid secretion system is employed in Pseudomonas amyloid biogenesis
Nat Commun. 2017 Aug 15;8(1):263. doi: 10.1038/s41467-017-00361-6.
PMID: 28811582

Looks can be deceiving: recent insights into the mechanism of protein secretion by the autotransporter pathway
Mol Microbiol. 2015 Jul;97(2):205-15. doi: 10.1111/mmi.13031. Epub 2015 May 15.
PMID: 25881492

The passenger-associated transport repeat promotes virulence factor secretion efficiency and delineates a distinct autotransporter subtype
Mol Microbiol. 2015 Jul;97(2):315-29. doi: 10.1111/mmi.13027. Epub 2015 May 9.
PMID: 25869731

Analyzing the Role of Periplasmic Folding Factors in the Biogenesis of OMPs and Members of the Type V Secretion System
Methods Mol Biol. 2015;1329:77-110. doi: 10.1007/978-1-4939-2871-2_7.
PMID: 26427678

Of linkers and autochaperones: an unambiguous nomenclature to identify common and uncommon themes for autotransporter secretion
Mol Microbiol. 2015 Jan;95(1):1-16. doi: 10.1111/mmi.12838. Epub 2014 Nov 24.
PMID: 25345653

Crystal structure of the Haemophilus influenzae Hap adhesin reveals an intercellular oligomerization mechanism for bacterial aggregation
EMBO J. 2011 Aug 12;30(18):3864-74. doi: 10.1038/emboj.2011.279.
PMID: 21841773

Autotransporter passenger domain secretion requires a hydrophobic cavity at the extracellular entrance of the ß-domain pore
Biochem J. 2011 May 1;435(3):577-87. doi: 10.1042/BJ20101548.
PMID: 21306302

Crystal structure of a full-length autotransporter
J Mol Biol. 2010 Feb 26;396(3):627-33. doi: 10.1016/j.jmb.2009.12.061. Epub 2010 Jan 11.
PMID: 20060837

Autotransporter structure reveals intra-barrel cleavage followed by conformational changes
Nat Struct Mol Biol. 2007 Dec;14(12):1214-20. doi: 10.1038/nsmb1322. Epub 2007 Nov 11.
PMID: 17994105

Type V protein secretion pathway: the autotransporter story
Microbiol Mol Biol Rev. 2004 Dec;68(4):692-744. doi: 10.1128/MMBR.68.4.692-744.2004.
PMID: 15590781

Structure of the translocator domain of a bacterial autotransporter
EMBO J. 2004 Mar 24;23(6):1257-66. doi: 10.1038/sj.emboj.7600148. Epub 2004 Mar 11.
PMID: 15014442

The autotransporter secretion system
Res Microbiol. 2004 Mar;155(2):53-60. doi: 10.1016/j.resmic.2003.10.002.
PMID: 14990256

Autotransporter and two-partner secretion: delivery of large-size virulence factors by gram-negative bacterial pathogens
Crit Rev Microbiol. 2004;30(4):275-86. doi: 10.1080/10408410490499872.
PMID: 15646401

Structural determinants of processing and secretion of the Haemophilus influenzae hap protein
Mol Microbiol. 1997 Nov;26(3):505-18. doi: 10.1046/j.1365-2958.1997.5921965.x.
PMID: 9402021

Proteins in this family with 3D-structure
View Entry
Description
Organism
Length
# strands
FapF
Pseudomonas sp. UK4
430
14


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